gemmi/seqalign.hpp file

Contents

Reference

Namespaces

namespace gemmi

Classes

struct gemmi::AlignmentScoring
struct gemmi::AlignmentResult
struct gemmi::AlignmentResult::Item

Functions

auto align_sequences(const std::vector<std::uint8_t>& query, const std::vector<std::uint8_t>& target, const std::vector<bool>& free_gapo, std::uint8_t m, const AlignmentScoring& scoring) -> AlignmentResult
auto align_string_sequences(const std::vector<std::string>& query, const std::vector<std::string>& target, const std::vector<bool>& free_gapo, const AlignmentScoring& scoring) -> AlignmentResult

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